Thanks loads for your input & advice. A very good question too which I should've considered myself!
Now I think about it, I think it's the speed of the bike, not the speed of the engine. I've not red lined / had it screaming, it's more it gets to 60 ish with gas / throttle to spare but is shaking so much I'm scared & ease off! It could be me shaking at that speed.
Prompting these thoughts does lead me to think something in my build quality, forks, engine mounts etc. Only done about 3k miles with all new, quality bearings, springs, shocks etc! Think I'll change the mounts anyway as I think I read BGM 1's are good.
I am also thinking your thoughts on my crank are valid and worrying! I'll look at this when something (inevitably for me) major happens & I need to strip the engine again.